For Comments or Questions Contact: Webmaster
Last modified
 
Patricia Ayoubi
Oklahoma State University
Assistant Professor and Academic Advisor, Department of Biochemistry & Molecular Biology
Address: 246 Noble Research Center, OSU, Stillwater, OK 74078
Phone: 405-744-6199 Fax: 405-744-7799
Email: ayoubi@okstate.edu
URL:

http://biochem4.okstate.edu/~ayoubi/
http://microarray.okstate.edu
Ph.D., Microbiology & Molecular Genetics, Oklahoma State University, 1997  
Postdoctoral: Microbiology & Molecular Genetics, Oklahoma State University, 1997-2001
Research Emphasis: Applied microarray analysis; Bioinformatics; Genomics; DNA/Genome sequence analysis
Related Activities:
 
Research Description:
 
Recent Publications:

Weng H, Ayoubi P (2005) GPAP (GenePix Pro Auto-Processor) for Online Preprocessing, Normalization and Statistical Analysis of Primary Microarray Data. BMC Bioinformatics. In preparation.

Ray A, Ayoubi PJ, Weng H, Macwana S, Prade R, Mort AJ (2005) Comparison of Transcriptional Changes in Aspergillus nidulans After Transfer from Growth on Glucose to Minimal Medium or to Growth on the Complex Carbohydrate Pectin. Appl Environ Microbiol, submitted.

de La Fuente J, Ayoubi P, Blouin EF, Almazan C, Naranjo V, Kocan KM (2005) Gene Expression Profiling of Human Promyelocytic Cells in Response to Infection with Anaplasma phagocytophilum. Cellular Microbiology 7, (4), 549-559.

Donnelly BE, Madden RD, Ayoubi P, Porter DR, Dillwith JW (2005) The Wheat (Triticum aestivum L.) Leaf Proteome. Proteomics B5(6), 1624-1633.

Uppalapati SR, Ayoubi P, Weng H, Palmer DA, Mitchell RE, Jones W, Bender CL (2005) The Phytotoxin Coronatine and Methyl Jasmonate Impact Multiple Phytohormone Pathways in Tomato. Plant Journal 42(2), 201-217.
 
Selected Additional Publications:

 Ramachandran A, Flinchbaugh J, Ayoubi P, Olah GA, Malayer J (2004) Target Discrimination by Surface Immobilized Molecular Beacons Designed to Detect to Francisella tularensis. Biosensors and Bioelectronics 19, 727-736.

Ray A, Macwana S, Ayoubi P, Hall LT, Prade R, Mort AJ (2004) Negative Subtraction Hybridization: An Efficient Method to Isolate Large Numbers of Condition-specific cDNAs. BMC Genomics 5, 22.

Ayoubi P, Armirneni L, Hall L, Hughes J, Krishna S, Kim S, Leite S, Macwana S, Prade R (2003) FungOntology: Gene Ontology of Fungal Genomes. In the Mycota VIII. K. Esser and P.A. Lemke (Series Eds.). Springer-Verlag, Berlin, Heidelberg, and New York. In Press.

Prade RA, Ayoubi P, Krishnan S, Macwana S, Russell H (2001) Accumulation of Stress and Cell Wall Degrading Enzyme Associated Transcripts during Asexual Development in Aspergillus nidulans. Genetics 157, 957-967.

Bohnert HJ, Ayoubi P, Borchert C, Bressan RA, Burnap RL, Cushman JC, Cushman MA, Deyholos M, Galbraith DW, Hasegawa PM, Jenks M, Kawasaki S, Koiwa H, Koreda S, Lee B-H, Michalowski CB, Misawa E, Nomura M, Ozturk M, Postier B, Prade R, Song C-P, Tanaka Y, Wang H, Zhu J-K (2001) A Genomics Approach Towards Salt Stress Tolerance. Plant Physiol, Biochem 39, 295-311.

Muralla R, Ayoubi P, Graminha M, Martinez-Rossi N, Rossi A, Prade RA (2001) Antifungal Target Selection: Using Bioinformatics to Make the Difference. In Pathogen Genomics: Impact on Human Health. K, Shaw (ed). Humana Press, Totowa, NJ.